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The Biologist Friendly Software

GeneMarker® is a unique genotype analysis software which integrates new technologies enhancing the speed, accuracy and ease of analysis. Biologist-friendly, the software is an excellent alternative to Applied BioSystems Genotyper® and GeneScan® or GeneMapper®software; LiCor’s SAGA, MegaBACE® Genetic Profiler and Fragment Profiler or MRC Holland’s Coffalyser . Compatible with outputs from all major sequencing systems i.e. ABI®PRISM, Beckman-Coulter®, and MegaBACE® platforms the software’s Windows® based operation (XP,Vista or 7) simplifies such applications as Amplified Fragment Length Analysis (AFLP®), t-RFLP, SSR (short sequence repeat) and Microsatellite Analysis, any genotyping application. GeneMarker includes integrated modules for MLPA®, MS-MLPA, LOH, SNapShot®, SNPlex®, SNPWave®. TILLING® (Targeted Induced Local Lesions in Genomes), Microsatellite Instability (MSI), Haplotype Analysis, Trisomy, as well as Cystic Fibrosis Analysis utilizing chemistries from GeneProbe®, MRC Holland, Abbott Diagnostics and others, Fragile X from Asuragen® and custom chemistries. Incorporated tools include Kinship Analysis of Wild Populations; Phylogeny Clustering; Project Comparison; as well as a User Management providing an analysis audit trail and editing.

GeneMarker Applications:
Fragile X
MLPA® (Multiplex Ligation‐dependent Probe Amplification)
Trisomy Analysis
Macromolecule Analysis Tool
ARMs & Comparative Analysis (Cystic Fibrosis Analysis)
MSI (Microsatellite Instability) Analysis
Merge Project
Kinship Analysis of Wild Populations and data base
Microsatellite (SSR, STR, VNTR)
SBE/ SnapShot®
Cluster Analysis
TILLING® & EcoTilling with slabgel or capillary data
Haplotype Analysis
Loss of Heterozygosity Analysis (LOH)
User Operation
Panel Selection
Sizing Technologies
User Management
Project Comparison

View live webinars
Introduction to GeneMarker (View) (view on )
Creating Custom Panels (View) (view on )
MLPA® Analysis (View) (view on )
Aneuploidy/Trisomy Analysis (View) (view on )
Relationship Testing and Cluster Analysis (View) (view on )
Merging two or more multiplexes for greater resolution of dendrogram (View) (view on )

Automated Applications, although GeneMarker can be used for any genotyping application, we have incorporated preset analysis modules for many key genotyping applications. Click here to access GeneMarker Application Notes

Application Notes

  • Fragile X Application Note (PDF)
  • AneuploidyAnalysis GeneMarker AppNote (PDF)
  • Capillary Tilling Application Note (PDF)
  • DatabaseSearching KinshipAnalysis App Note (PDF)
  • Genotype Merge Tool App Note (PDF)
  • GM Kinship Analysis Application Note (PDF)
  • Haplotype Analysis App Note (PDF)
  • MS-MLPA Application Note (PDF)
  • MLPA Application note (PDF)
  • New Technology Size Calling App Note (PDF)
  • LOH application note (PDF)
  • Microsatellite and Pedigree Technical Note (PDF)
  • AFLP® Application Note (PDF)
  • Yale AFLP Analysis comparison (PDF)
  • MLPA Luminex Application Note (PDF)
  • MSI Application Note (PDF)
  • SBE-SNaPshot™ Application Note (PDF)
  • SNPlex™ Application Note (PDF)
  • SNPWave® Application Note (PDF)
  • T-RFLP Application Note (PDF)
  • Trisomy Application Note (PDF)
  • Clustering Algorithms Application Note (PDF)
  • Analysis of MegaBACE™ Data with GeneMarker® Software Application Note (PDF)

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