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The Biologist Friendly Software

GeneMarker® is a unique genotype analysis software which integrates new technologies enhancing the speed, accuracy and ease of analysis. Biologist-friendly, the software is an excellent alternative to Applied BioSystems Genotyper® and GeneScan® or GeneMapper®software; LiCor’s SAGA, MegaBACE® Genetic Profiler and Fragment Profiler or MRC Holland’s Coffalyser . Compatible with outputs from all major sequencing systems i.e. ABI®PRISM, Beckman-Coulter®, and MegaBACE® platforms the software’s Windows® based operation (XP,Vista or 7) simplifies such applications as Amplified Fragment Length Analysis (AFLP®), t-RFLP, SSR (short sequence repeat) and Microsatellite Analysis, any genotyping application. GeneMarker includes integrated modules for MLPA®, MS-MLPA, LOH, SNapShot®, SNPlex®, SNPWave®. TILLING® (Targeted Induced Local Lesions in Genomes), Microsatellite Instability (MSI), Haplotype Analysis, Trisomy, as well as Cystic Fibrosis Analysis utilizing chemistries from GeneProbe®, MRC Holland, Abbott Diagnostics and others, Fragile X from Asuragen® and custom chemistries. Incorporated tools include Kinship Analysis of Wild Populations; Phylogeny Clustering; Project Comparison; as well as a User Management providing an analysis audit trail and editing.

User Operation
Panel Selection
Sizing Technologies
User Management
Project Comparison

View live webinars
Introduction to GeneMarker software (View) (view on )
Creating Custom Panels with GeneMarker (View) (view on )
MLPA® Analysis with GeneMarker software live demonstration (View) (view on )
Aneuploidy/Trisomy Analysis with GeneMarker software (View) (view on )
Relationship Testing and Cluster Analysis (View) (view on )
Creating Panels for Custom Chemistries (View) (view on )
Merging two or more multiplexes for greater resolution of dendrogram (View) (view on )

Automated Applications, although GeneMarker can be used for any genotyping application, we have incorporated preset analysis modules for many key genotyping applications.

Application Notes

  • AneuploidyAnalysis GeneMarker AppNote (PDF)
  • Capillary Tilling Application Note (PDF)
  • DatabaseSearching KinshipAnalysis App Note (PDF)
  • Genotype Merge Tool App Note (PDF)
  • GM Kinship Analysis Application Note (PDF)
  • Haplotype Analysis App Note (PDF)
  • MS-MLPA Application Note (PDF)
  • MLPA Application note (PDF)
  • New Technology Size Calling App Note (PDF)
  • LOH application note (PDF)
  • Microsatellite and Pedigree Technical Note (PDF)
  • AFLP® Application Note (PDF)
  • Yale AFLP Analysis comparison (PDF)
  • MLPA Luminex Application Note (PDF)
  • MSI Application Note (PDF)
  • SBE-SNaPshot™ Application Note (PDF)
  • SNPlex™ Application Note (PDF)
  • SNPWave® Application Note (PDF)
  • T-RFLP Application Note (PDF)
  • Trisomy Application Note (PDF)
  • Clustering Algorithms Application Note (PDF)
  • Analysis of MegaBACE™ Data with GeneMarker® Software Application Note (PDF)
  • Analysis of 2-Dye Fragile X Data with GeneMarker® Software (PDF)

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Download/View GeneMarker® Brochure

GeneMarker Applications:
MLPA® (Multiplex Ligation‐dependent Probe Amplification)
MS‐MLPA®
Trisomy Analysis
Macromolecule Analysis Tool
ARMs & Comparative Analysis (Cystic Fibrosis Analysis)
MSI (Microsatellite Instability) Analysis
Merge Project
Kinship Analysis of Wild Populations and data base
AFLP
t‐RFLP
Microsatellite (SSR, STR, VNTR)
MLVA
SBE/ SnapShot®
Cluster Analysis
TILLING® & EcoTilling with slabgel or capillary data
SNPWave®/SNPlex®
Haplotype Analysis
Loss of Heterozygosity Analysis (LOH)









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