SNP/INDEL & Structural Variant detection of short sequence reads
NextGENe software has been developed specifically for use by biologists performing whole genome or targeted resequencing projects containing single nucleotide polymorphisms (SNPs), Insertions/deletions (INDELs) and large structural DNA rearrangements from NGS sequencing data produced by Roche GS, FLX and Junior systems, Illumina GA, HiSeq and MiSeq platforms, Life Technologies Applied BioSystems SOLiD System, Ion Torrent PGM platform or the PacBio system. NextGENe software operates on a Windows® OS providing biologist-friendly point & click interface that does not require scripting or other bioinformatics support, removing the complexity often found in other programs such as CLC Bio, LaserGene, NGEN,MAQ,SOAP, Top Hat, BWA and Bowtie. Biologists simply input the raw reads or BAM files, select the application and click to begin analysis. Upon completion results are presented in NextGENe’s annotated whole genome browser/viewer for review, filtering, editing and commenting.
NextGENe features up to 99% accuracy, INDEL detection up to 33% of read length, rapid review of DNA variants, nucleotides, and Amino Acids. The software also includes a host of filtering options, variant confidence scoring, multiple analysis comparison capabilities, hyper links to dbSNP / GenBank and possible causative prediction.
NextGENe software also includes an analysis Pipeline tool for unattended analysis of varying sequencing projects.
Instrument specific SNP/INDEL analysis:
Illumina, Roche and SOLiD System Analysis
Ion Torrent PGM
Review additional NextGENe software applications:
Pricing & Trial Version:
Request 30-day trial/Price Quote
Reference Material:
Download/View NextGENe® Brochure
NextGENe User Manual
Annotated Reference Genomes
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