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Annotated Reference Genomes available for use with NextGENe Software

In order to efficiently align large genomes and to locate Indels found in 2nd generation sequencing data NextGENe utilizes a modified BWA methodology. The following annotated pre-indexed reference genomes are complimentary to NextGENe software users. Additional annotated genomes are available upon request.

Annotated Genome
Build Number
Roche/Illumina/PacBio/Ion PGM Platforms
SOLiD™ System
Arabidopsis thaliana
9.1
Available
Available
C. elegans
ws170
Available
Available
C. elegans
ws190
Available
Available
C. elegans
ws195
Available
Available
Chicken
2.1
Available
Available
Clover
3.0
Available
Available
Cow
4.1
Available
Available
Cow (UMD)
3.1
Available
Available
Cucumber
1.0
Available
Available
Dog
2.1
Available
Available
Drosophila melanogaster
5.22
Available
Available
Grape
12x Ensembl 102
Available
Available
Horse
2.1 (beta)
Available
Available
Human
36.3
Available
Available
Human SNP 131
single transcript/gene
37.1
Available
Available
Human SNP 132
all transcripts
37.2
Available
Available
Maize
B73agpv1
Available
Available
Mouse
37.1
Available
Available
Rat
3.4
Available
Available
Rice
4.1
Available
Available
Rice
6.1
Available
Available
Sheep
1.0
Available
Available
Zebra Fish
zv9
Available
Available
B. malayi
ws226
Available
Available
C. elegans
ws226
Available
Available
Human SNP 132
all transcripts
37.2
Available
Available
M. hapla
ws226
Available
Available
M. incognita
ws226
Available
Available
Ustilago maydis
1.1
Available
Available

To Request annotated reference genome please email info@softgenetics.com indicated reference of interest and from which platform the data has been generated.

Review additional NextGENe software applications:

Pricing & Trial Version:
Request 30-day trial/Price Quote

Reference Material:
Download/View NextGENe® Brochure
NextGENe User Manual
Annotated Reference Genomes

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