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Application Notes

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Mutation Surveyor®

  • DNA Mutation and Methylation Quantification Application Note (PDF)
  • Heterozygous DNA INDEL Application Note (PDF)
  • NGRL Technology Assessment (PDF)
  • Sequence Assembly Application Note (PDF)
  • Somatic Mutation Detection Technical Note (PDF)
  • UPMC Validation Poster (PDF)
  • Genetic Diversity Application Note (PDF)
  • Heterozygous In-Del Application Note (PDF)
  • Hypervariable Mutation Detection (PDF)
  • Methylation Detection Application Note (PDF)
  • Mitochondrial DNA Sequence Analysis using Mutation Surveyor® Software (PDF)

NextGENe®

  • Condensation Application Note (PDF)
  • Format Conversion Application Note (PDF)
  • Illumina SNP & INDEL Detection with NextGENe software (PDF)
  • SNP & INDEL Detection of SOLiD™ System Sequence Data with NextGENe (PDF)
  • SNP & Indel Detection of 454 Sequence Data with NextGENe (PDF)
  • Working with Mutation Scores in NextGENe software (PDF)
  • Working with Capture Data Application Note (PDF)
  • Working with Variant Comparison Tool Application Note (PDF)
  • Structural Variant Detection Application Note (PDF)
  • Merging Paired End Reads Application Note (PDF)
  • De novo Assembly Application Note (PDF
  • De novo Assembly of SOLiD Sequence Reads Application Note (PDF
  • Paired Read Assembly Application Note (PDF)
  • De Bruijn Assembly Application Note (PDF)
  • Whole Genome Application Note (PDF)
  • Transcriptome Analysis Application Note (PDF) 
  • SOLiD Transcriptome Application Note (PDF)
  • RNA-Seq Analysis with NextGENe Software (PDF)
  • ChIP-Seq Analysis Application Note (PDF)
  • Processing IonTorrent Sequencing Data Application Note (PDF)
  • Amplicon Sequence Analysis of ION PGM data with NextGENe Application Note (PDF)
  • Metagenomic Studies of Viral and Bacterial Infections Application Note (PDF)
  • Serial Analysis of Gene Expression (SAGE) Application Note (PDF)
  • Small RNA Application Note (PDF)
  • Bar-Coding Application Note (PDF)
  • Deep Sequencing Application Note (PDF)
  • Target Sequencing Analysis Application Note (PDF)
  • Alignment of Paired Read Application Note (PDF)
  • Human Identity Analysis Application Note (PDF)
  • Using NextGENe software's Pipeline Automation Tool (PDF)
  • Demultiplexing Illumina® MiSeq™ Data (PDF)
  • IonPGM PE Alignment (PDF)
  • Ion AmpliSeq  (PDF)
  • Ion CFTR Analysis (PDF)
  • Analyzing Sequence Data from GS GType Targeted Sequencing of Leukemia-Associated Genes using NextGENe® Software (PDF)
  • Finding Causative Mutation Candidates in Rare Disease Studies using NextGENe’s Variant Comparison Tool (PDF)
  • CNV Detection: Dispersion and HMM with RPKM (PDF)

GeneMarker®

  • Fragile X Application Note (PDF)
  • AneuploidyAnalysis GeneMarker AppNote (PDF)
  • Capillary Tilling Application Note (PDF)
  • DatabaseSearching KinshipAnalysis App Note (PDF)
  • Genotype Merge Tool App Note (PDF)
  • GM Kinship Analysis Application Note (PDF)
  • Haplotype Analysis App Note (PDF)
  • MS-MLPA Application Note (PDF)
  • MLPA Application note (PDF)
  • New Technology Size Calling App Note (PDF)
  • LOH application note (PDF)
  • Microsatellite and Pedigree Technical Note (PDF)
  • AFLP® Application Note (PDF)
  • Yale AFLP Analysis comparison (PDF)
  • MLPA Luminex Application Note (PDF)
  • MSI Application Note (PDF)
  • SBE-SNaPshot™ Application Note (PDF)
  • SNPlex™ Application Note (PDF)
  • SNPWave® Application Note (PDF)
  • T-RFLP Application Note (PDF)
  • Trisomy Application Note (PDF)
  • Clustering Algorithms Application Note (PDF)
  • Analysis of MegaBACE™ Data with GeneMarker® Software Application Note (PDF)
  • New Technology Size Calling Application Note (PDF)

GeneMarker®HID

  • Cell Line Authentication (PDF)
  • MixtureAnalysis with GeneMarkerHID (PDF)
  • Crime Scene Suspect Application Note (PDF)
  • Paternity Testing Application Note (PDF)
  • Missing Persons Identification Application Note (PDF)
  • Locus Specific Bracket (LSB) Application Note (PDF)

JelMarker®

  • AFLP® Analysis with JelMarker (PDF)
  • TILLING Application Note (PDF)
  • AFLP Analysis of gel images Application Note (PDF)








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