To generate a Batch Coverage report
1. Open the location from which you are generating the report:
• The Samples sub-tab on the Patient tab.
• The Runs tab.
• The Samples pane on the Run tab.
• The Associated Samples pane on the Variant tab.
2. Do one of the following:
• Select the sample or CTRL-click to select the multiple samples for which the Batch Coverage report is to be generated, and then right-click any selected sample, and on the context menu that opens, click Export > Create Batch Coverage report.
• Select the run or CTRL-click to select the multiple runs for which the Batch Coverage report is to be generated, and then right-click any selected run, and on the context menu that opens, click Export > Create Batch Coverage report.
The Batch Coverage report dialog box opens.
3. Leave the report type set to the default value of .csv, or select a different report type.
4. Next to the Save To field, click the Browse button 
to open the Save To dialog box, and then browse to and select the location in which to save the report.
to open the Save To dialog box, and then browse to and select the location in which to save the report.5. To calculate the panel coverage statistics for the report based on all panel samples, click OK; otherwise, specify the different options (listed in the table below) by which to calculate the panel coverage statistics, and then click OK.
After you click OK to generate the report, the Current Jobs tab opens. The tab displays the progress of calculating the coverage information for every sample that was selected for the report. A report file is saved in the specified format and the specified location.
Option | Description |
|---|---|
All panel samples added between | To specify a custom date range for calculating the panel coverage statistics, select added between, and then change one or both dates as needed. To change the dates, you can do either of the following: • You can select any part of the date that you want to change, or the entire date, and then manually enter the new value. (The default date range is the last 30 days). • You can select any part of the date that you want to change, and then use the Up/Down arrows to change the date accordingly. |
Selected runs | To select specific runs for calculating the panel coverage statistics, choose Selected runs, and then next to Selected runs, click the Browse button to open the Select Runs dialog box. By default, all the runs for the panel are displayed in the dialog box. Select a run, or CTRL-click to select multiple runs, and then click OK. |
Selected samples | To select only specific samples for calculating the panel coverage statistics, choose Selected samples, and then next to Selected samples, click the Browse button to open the Select Samples dialog box. By default, all the samples for the panel are displayed in the dialog box. Select a sample, or CTRL-click to select multiple samples, and then click OK.Note: If the report is to be generated based on only a small number of samples, such as two to four, then, before the statistics are calculated, a Very few samples message dialog box opens, warning you of this and asking you if you want to continue. You can click Yes, or you can click Cancel to return to the Patient tab. |