Analysis Information page, Genotypes tab
From left to the right, the Genotypes tab on the Analysis Information page shows the following information on a per marker basis:
• Genotype Probabilities: For each contributor (Known and Unknown), a heat map for the marker that indicates the most likely genotype combination of the sample on a scale of 0 -1, with the least likely combination set to 0 and shown in dark purple and the most likely combination set to 1 and shown in yellow.
• Genotype Convergence plot: Displays the convergence for each Unknown contributor individually.
• Genotype Set Convergence plot: Displays the convergence for all Unknown contributors together.
Two sub-tabs are displayed at the bottom of the Genotypes tab:
• Genotype Set Weights: The tab that is open by default. The weighted genotype for the most likely genotype combination for the marker.
• Genotype Probabilities: The relative probability of different genotype combinations for the marker based on how frequently these combinations were accepted during the MCMC process.