Gene CNV report
To generate the Gene CNV report, on the CNV Tool report toolbar, click the Gene CNV report icon 
. The Gene CNV report groups together consecutive regions that have a CNV into a single report line. Consecutive regions can be grouped up to a single gene. Regions are not grouped across multiple genes. You can use the Gene CNV Report to focus on consecutive regions that show evidence of a CNV. In general, individual regions are not included in the report, unless their weighted ratios exceed the threshold that is defined. Smaller regions where the number of consecutive regions is less than the threshold that is specified for the Show Gene Exon Number setting can be included in the report based on their weighted ratios according to the following:
. The Gene CNV report groups together consecutive regions that have a CNV into a single report line. Consecutive regions can be grouped up to a single gene. Regions are not grouped across multiple genes. You can use the Gene CNV Report to focus on consecutive regions that show evidence of a CNV. In general, individual regions are not included in the report, unless their weighted ratios exceed the threshold that is defined. Smaller regions where the number of consecutive regions is less than the threshold that is specified for the Show Gene Exon Number setting can be included in the report based on their weighted ratios according to the following:Weighted Log2 Ratio = Log2 Ratio * NCR/Show Gene Exon Number
where NCR = Number of Consecutive Regions and Gene Exon Number is afilter setting for the report.
The Gene CNV report is interactive:
Option | Description |
|---|---|
Modify the Gene CNV report settings | On the report toolbar, click the Settings icon  , to open the Gene CNV Report Settings dialog box and modify the report settings as needed. The report display is dynamically updated after you save the modifications. See Modifying the Gene CNV report. |
Save the report to a text file | On the report toolbar, click the Save Report icon  . A default name (<project_name>_CNVGeneReport and location (project folder) are provided for the file, but you can change both of these values. |
Generate the Block CNV report | On the report toolbar, click the Block CNV report icon  . See Block CNV report. |
Generate the graphical display of the data | On the report toolbar, click the CNV Graphs icon  . See CNV graphs. |