SoftGenetics - Software PowerTools for Genetic Analysis





GeneMarker® software is unique genotype analysis software which integrates new technologies that enhance speed, accuracy and ease of analyses. The biologist-friendly software is an excellent alternative to: Applied BioSystems GeneMapper® software, or MRC Holland's Coffalyser.Net software. GeneMarker software is compatible with output files from all major sequencing systems, including ABI®PRISM, Applied Biosystems SeqStudio™, and Promega Spectrum Compact CE Systems genetic analyzers, as well as custom primers or commercially available 4-6 dye chemistries. GeneMarker software's Windows® 7-10 based operation simplifies analyses for clinical and basic research in agriculture/wildlife applications.


Read Interesting Case Studies:


Clinical Research

  • MLPA®
  • Microsatellite Instability (MSI)
  • Repeat Expansion Disorders
  • Fragile X
  • Trisomy
  • Loss of Heterozygosity (LOH)
  • Cystic Fibrosis
  • Haplotype Analysis
  • SBE/ SNaPshot®

Agriculture/Wildlife Research

  • Microsatellites (SSR, STR, VNTR)
  • Kinship Analysis & Database Search
  • Phylogeny, Clustering, Dendrograms
  • AFLP
  • t-RFLP
  • TILLING® & EcoTilling
  • MLVA
  • Macromolecule Analysis (if ILS is absent)

GeneMarker Software User-Friendly Genotyping Features:
User Operation
Panel Selection
Sizing Technologies
User Management
Project Comparison
Replicate Comparison


View Live Webinars:
Introduction to GeneMarker software (View) (view on )
Creating Custom Panels (View) (view on )
MLPA® Analysis (View) (view on )
Aneuploidy/Trisomy Analysis (View) (view on )
Relationship Testing and Cluster Analysis (View) (view on )
Merging two or more multiplexes for greater resolution of dendrogram (View) (view on )
Fragile X Analysis Using GeneMarker software (View) (view on )


Download Application Notes

  • Repeat Expansion Diseases HTT, DMPK, ALS Application Note (PDF)
  • Fragile X Application Note (PDF)
  • AneuploidyAnalysis GeneMarker software AppNote (PDF)
  • Trisomy Application Note (PDF)
  • MLPA Application note (PDF)
  • MS-MLPA Application Note (PDF)
  • MSI Application Note (PDF)
  • LOH application note (PDF)
  • Haplotype Analysis App Note (PDF)
  • SBE-SNaPshot™ Application Note (PDF)
  • Microsatellite and Pedigree Technical Note (PDF)
  • DatabaseSearching KinshipAnalysis App Note (PDF)
  • Genotype Merge Tool App Note (PDF)
  • Replicate Comparison Tool Application Note (PDF)
  • GM Kinship Analysis Application Note (PDF)
  • Clustering Algorithms Application Note (PDF)
  • Capillary Tilling Application Note (PDF)
  • New Technology Size Calling App Note (PDF)
  • AFLP® Application Note (PDF)
  • Yale AFLP Analysis comparison (PDF)
  • T-RFLP Application Note (PDF)



For more information, please contact


MLPA® is the registered trademark of MRC Holland

SoftGenetics - Software PowerTools for Genetic Analysis

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SoftGenetics - Software PowerTools for Genetic Analysis




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SoftGenetics - Software PowerTools for Genetic Analysis

100 Oakwood Avenue | Suite 350 | State College, PA 16803 | USA
Phone: 814-237-9340 or 888-791-1270


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